ObjectivesTo characterize the survival of individuals with pathogenic PRNP variants -- including to estimate annual hazards, to judge the accuracy of previously reported survival data, and to evaluate the utility of public record searches in determining vital status.

MethodsIn this single center cohort study, we gathered data on individuals who received positive antemortem PRNP genetic tests at the U.S. National Prion Disease Pathology Surveillance Center (NPDPSC). Genetic test results and autopsy status were queried from the NPDPSC database, and public record searches were conducted using online tools.

Results404 individuals received positive genetic test results. Of 206 cases symptomatic at the time of genetic testing, 188 are likely now deceased based on typical disease duration for their genetic variants. Combined autopsy and public record searches in combination confirmed 174 of these deaths, for an estimated sensitivity of 92.6%. Of 111 autopsied individuals, evidence of death was found in public record searches for 109, a sensitivity of 98.2%. Of 198 individuals who were asymptomatic at the time of testing, 32 since died of definite or possible prion disease. Among 20 of these who underwent autopsy, public record searches confirmed deaths of 18, for a sensitivity of 90%. Among 99 E200K individuals over 936 person-years of follow-up, 18 deaths were observed, significantly fewer than 27.4 expected according to life tables based on retrospective data. The age-dependent penetrance of E200K calculated from these longitudinal data was significantly lower than that from retrospective data, with 69% penetrance by age 80 and a median age at death of 75. No significant difference was found for D178N, which appears highly penetrant, though the median age at death was numerically higher than seen in retrospective data. V210I was associated with just 2 deaths, both after age 90, consistent with minimal penetrance.

DiscussionThese data support the accuracy of penetrance classifications for PRNP variants reported based on retrospective data, but may suggest an age of onset distribution shifted slightly later than that calculated retrospectively. Autopsy data and public death records in combination were sensitive and concordant, but additional prospective data should be gathered to support future preventive trials.

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Analysis of the Text: Significance, Importance, Timeliness, and Relevance

The text presents a pilot study comparing the efficacy of adaptive deep brain stimulation (aDBS) and conventional deep brain stimulation (cDBS) in patients with Parkinson's disease (PD) under chronic stimulation. This topic is significant due to the ongoing quest for more effective treatments for PD, a neurodegenerative disorder that affects millions worldwide.

Importance:

  1. Improved treatment options: The study aims to identify the most effective stimulation approach for PD patients, which could lead to better motor function, reduced symptom severity, and improved quality of life.
  2. Personalized medicine: The findings suggest that patient-specific baseline characteristics may influence treatment advantages, highlighting the need for a more personalized approach to treatment.

Timeliness:

  1. Advancements in neurotechnology: The study leverages recent advances in neurotechnology, such as aDBS, which has the potential to revolutionize treatment for PD.
  2. Growing demand for effective treatments: The increasing prevalence of PD and the limited effectiveness of current treatments make it essential to explore alternative approaches like aDBS.

Relevance:

  1. Clinical implications: The study's findings have direct implications for PD treatment, highlighting the need for larger trials to identify patient subgroups who may benefit from aDBS or cDBS.
  2. Mechanistic insights: The study provides insights into the underlying mechanisms of aDBS and cDBS, shedding light on the complex interactions between stimulation parameters and patient response.

Relationship between items:

  1. Background: The limited clinical evidence for aDBS under chronic stimulation highlights the need for this study to investigate its efficacy compared to cDBS.
  2. Objectives: The study's objectives are closely tied to the background, aiming to compare aDBS and cDBS efficacy and examine baseline-dependent patterns of treatment response.
  3. Methods: The study design, including the double-blind, randomized crossover trial and the use of a dual-threshold algorithm, is crucial for obtaining reliable results and minimizing bias.
  4. Results: The results of the study, including the lack of statistically significant differences between treatments, are essential for understanding the efficacy of aDBS and cDBS in PD patients.
  5. Conclusions: The conclusions drawn from the study, highlighting the comparable population-level efficacy of aDBS and cDBS, are critical for informing future treatment decisions and trial design.

Usefulness of the text for disease management or drug discovery:

  1. Implications for PD treatment: The study's findings have direct implications for PD treatment, highlighting the need for larger trials to identify patient subgroups who may benefit from aDBS or cDBS.
  2. Informing future studies: The study's results and conclusions provide valuable insights for designing future studies, including the importance of considering patient-specific baseline characteristics.

Original information beyond the obvious:

While the study's findings may not represent a breakthrough, they do provide new insights into the efficacy of aDBS and cDBS in PD patients. The study's conclusions, highlighting the need for larger trials to identify patient subgroups who may benefit from each stimulation approach, are particularly noteworthy. Additionally, the study's results on the impact of baseline disease burden on treatment advantages are an important contribution to the field.

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Significance, Importance, Timeliness, and Relevance:

The topic of this text revolves around the genetic connection between TAS2R38, a taste receptor implicated in innate immunity, and Alzheimer's disease (AD). The significance of this research lies in its potential to aid in the development of new treatments or repurpose existing ones for AD management. This is crucial as AD remains a leading cause of dementia worldwide, with limited treatment options available.

The importance of this study is twofold: it explores a novel relationship between a taste receptor and AD risk, which could lead to new therapeutic targets. The timeliness of this research is also evident, given the growing understanding of the role of genetics in disease susceptibility and the increasing emphasis on precision medicine.

In terms of relevance, the study leverages existing databases (ADNI and ROSMAP) and utilizes established methodologies (linear mixed-effects models and RNA-seq analysis), making it a valuable contribution to the field of AD research.

Relationship between items in the text:

  • The genetic connection between TAS2R38 and AD biomarkers was identified using linear mixed-effects models, utilizing data from the ADNI study (n = 2,342).
  • The molecular mechanisms underlying this association were explored using eQTL analysis, which connected the nontaster allele to increased expression of the gene MGAM in AD-affected brain regions.
  • The expression of MGAM was also associated with more severe Tau burdens, suggesting a link between MGAM expression and AD pathology.
  • A cohort study using the NACC dataset found that individuals taking MGAM-inhibiting diabetes drugs (Acarbose and Miglitol) had slower CDR progression compared to non-takers.

Usefulness for disease management or drug discovery:

This study suggests that TAS2R38 haplotypes could guide precision drug repurposing strategies for AD. Specifically, the identification of MGAM as a novel drug target with existing FDA-approved inhibitors (Acarbose and Miglitol) provides a valuable lead for future research.

Originality:

While the study builds upon existing knowledge in the field, it presents novel connections between TAS2R38, MGAM, and AD pathology. The identification of MGAM as a potential therapeutic target is a notable finding, as it suggests a new avenue for AD treatment.

Comparison to the state of the art:

This study contributes to our understanding of the genetic and molecular mechanisms underlying AD susceptibility. However, it should be noted that the sample sizes used in this study are relatively small compared to other AD research studies.

In conclusion, this study provides a valuable addition to the growing body of evidence on the genetic and molecular mechanisms of AD. The identification of MGAM as a potential therapeutic target with existing FDA-approved inhibitors holds promise for future research and potential clinical applications.

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Permutation entropy (PE) is increasingly studied as an EEG biomarker for Alzheimers disease and related dementias. However, PE requires specifying two free parameters (embedding order and delay) whose interaction with sampling rate determines the timescale being measured. No study in the PE-dementia literature has tested whether results are robust across parameterizations. Here we demonstrate they are not. On 1,177 clinical EEGs from the CAUEEG dataset (457 Normal, 414 MCI, 306 Dementia), we computed PE on alpha-band (8-12 Hz) signals using four parameterizations spanning different timescales and state-space sizes, on eyes-closed segments with artifact exclusion and per-segment entropy computation to avoid boundary artifacts. The results diverged dramatically: effect sizes for dementia vs. normal ranged from d = -0.700 (decreased PE, p < 0.0001) to d = +0.709 (increased PE, p < 0.0001) depending solely on parameter choice, with two parameterizations yielding complete nulls (d {approx} 0). The commonly used sub-cycle parameterization (order = 3, delay = 1) produced a large effect by measuring local waveform curvature rather than ordinal pattern complexity. With theoretically appropriate alpha-timescale parameters (order = 5, delay = 5; 100 ms embedding window spanning one full alpha cycle), PE was a complete null (d = -0.025, p = 0.73). To contextualize these findings against conventional spectral analysis, we computed the relative alpha/theta power ratio as a spectral baseline (d = -0.727, AUC = 0.739). We show that PEs null at proper parameters reflects a structural limitation: PEs rank-order design discards all distance information between values, rendering it blind to the regularity structure that distinguishes healthy alpha oscillations from the fragmented activity in dementia. By contrast, alpha-band sample entropy (SE), whose Chebyshev distance metric preserves absolute differences between time points, showed the strongest entropy effect (d = 0.519, age-corrected d = 0.373, AUC = 0.720) and was essentially independent of spectral power (r = -0.043). Combining SE with the spectral power ratio in a bivariate model yielded AUC = 0.786 for dementia detection, demonstrating that these orthogonal features are complementary. The alpha/theta Lempel-Ziv Complexity ratio (d = 0.471, age-corrected d = 0.364) shared 52% of its variance with the power ratio, indicating it largely indexes spectral content. We additionally report a pre-specified validation of the LZC ratio from a discovery dataset (N = 88). These findings indicate that PE results are not comparable across studies unless parameters and sampling rates match exactly, that PE is structurally unsuited to detecting the regularity disruption characteristic of oscillatory pathology, and that distance-based entropy measures like SE deserve priority over ordinal measures in EEG biomarker research for dementia.

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Analysis of the Text: Significance, Importance, Timeliness, and Relevance

The text discusses the use of Deep Brain Stimulation (DBS) as a treatment for motor symptoms in Parkinson's Disease (PD) patients. The study aims to map the sensitivity of cortical neural responses to changes in DBS parameters and to develop methods for optimizing stimulation parameters.

Significance: The development of more effective DBS programming methods is crucial for improving treatment outcomes for PD patients. Current DBS programming involves trial-and-error adjustments, which can be time-consuming and may not optimize the effectiveness of the treatment. This study's findings could contribute to the development of more efficient and personalized DBS programming methods.

Importance: Parkinson's Disease is a neurodegenerative disorder that affects millions of people worldwide. DBS is a widely used treatment for motor symptoms associated with the disease. However, the impact of DBS on brain activity and the optimization of stimulation parameters remain unclear. This study's findings could have a significant impact on the development of more effective DBS programming methods and potentially lead to better treatment outcomes for PD patients.

Timeliness: The study's focus on developing methods for optimizing DBS parameters is timely given the increasing use of DBS in clinical settings. The development of more efficient and personalized DBS programming methods could improve treatment outcomes and reduce the burden of disease on patients and healthcare systems.

Relevance: The study's findings are relevant to the field of Parkinson's Disease research and treatment. The development of more effective DBS programming methods could improve treatment outcomes, reduce side effects, and enhance the quality of life for PD patients. Additionally, the study's focus on neural oscillations and digital biomarkers could have broader implications for the development of personalized medicine and disease management strategies.

Breakdown of the Text:

  1. Introduction: The text introduces the study's purpose, which is to map the sensitivity of cortical neural responses to changes in DBS parameters and to develop methods for optimizing stimulation parameters.
  2. Methods: The study used EEG data recorded from PD patients during clinical DBS programming sessions to develop a deep learning architecture that could classify whether two 1-second EEG segments corresponded to the same or different DBS parameters.
  3. Results: The study found that the models achieved an average accuracy of 78% in classifying whether two 1-second EEG segments corresponded to the same or different DBS parameters. Explainability methods were applied to extract the neural oscillations learned by the models, which identified mid-gamma oscillations (60-90Hz) as the key band for classifying these changes.
  4. Conclusion: The study's findings suggest that small DBS parameter changes modify cortical activity in a consistent manner that can be detected using shallow convolutional networks on low-density EEG.

Usefulness for Disease Management and Drug Discovery:

The study's findings could be useful for developing more effective DBS programming methods and personalized medicine strategies. The identification of mid-gamma oscillations (60-90Hz) as the key band for classifying changes in DBS parameters could lead to the development of novel digital biomarkers for guiding DBS programming and adaptive DBS systems. This could potentially improve treatment outcomes for PD patients.

Original Information Beyond the Obvious:

The study's findings are significant because they provide new insights into the neural mechanisms underlying DBS and the development of more effective DBS programming methods. The study's use of deep learning architectures and explainability methods to analyze EEG data is innovative and could have broader implications for the development of personalized medicine and disease management strategies.

However, the study's findings are not entirely original, as previous studies have explored the use of DBS and neural oscillations in PD patients. The study's contribution lies in its development of a novel deep learning architecture and its application of explainability methods to extract the neural oscillations learned by the models.

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IsomiR Utility in ALS Prognostication

- Posted by system in English

Significance of the Topic:

Amyotrophic Lateral Sclerosis (ALS) is a devastating neurodegenerative disease with limited treatment options. Early diagnosis and prognostication are critical in managing ALS, as they can significantly impact the quality of life for patients and their caregivers. The discovery of reliable biomarkers for ALS can provide valuable insights into disease progression and enable clinicians to develop more effective treatment strategies.

Importance:

The identification of plasma isomiRs as potential biomarkers for ALS is significant because it opens up new avenues for non-invasive monitoring of disease progression and response to treatment. IsomiRs are microRNA isoforms that are distinct from their parent microRNAs, and their presence in the plasma can be indicative of cellular stress or damage. The potential utility of isomiRs as biomarkers for neurodegenerative diseases is an area of active research, and this study contributes to our understanding of their role in ALS.

Timeliness:

The study's focus on plasma isomiRs as biomarkers for ALS is timely, given the growing interest in using liquid biopsies for disease diagnosis and monitoring. Liquid biopsies offer a non-invasive and cost-effective way to monitor disease progression and response to treatment, making them an attractive option for clinicians and researchers.

Relevance:

The study's findings are relevant to ALS research and clinical practice because they provide evidence that plasma isomiRs can be used to predict survival in ALS patients. The identified isomiR, let-7g-5p.t, has prognostic utility comparable to that of established biomarkers, such as neurofilament light chain (NfL) and miR-181. This suggests that plasma isomiRs could be used as a novel class of biomarkers for ALS, potentially refining prognostication in clinical trials and improving patient outcomes.

Items of the text and their relationships:

  1. Background: The text provides context on ALS and isomiRs, explaining that while isomiRs have distinct biological and clinical relevance, their potential as cell-free biomarkers in neurodegeneration remains largely unexplored.
  2. Method: The researchers used next-generation sequencing and two orthogonal statistical approaches to investigate the prognostic utility of plasma isomiRs in ALS.
  3. Findings: The study identified higher levels of let-7g-5p.t in ALS patients, which was associated with longer survival and independently validated in an international ALS cohort.
  4. Conclusion: The results establish isomiRs as a novel class of blood-based biomarkers in ALS, with potential to refine prognostication in clinical trials for neurodegenerative diseases.

Usefulness for disease management or drug discovery:

The study's findings are useful for disease management and drug discovery because they:

  1. Provide new biomarkers: The identified isomiR, let-7g-5p.t, can be used as a biomarker for ALS, potentially improving prognostication and patient outcomes.
  2. Inform treatment strategies: The study's findings can inform the development of new treatment strategies for ALS, such as targeted therapies that modulate the expression of isomiRs.

Originality:

The study provides original information beyond the obvious because it:

  1. Investigates a novel biomarker: The study investigates the use of plasma isomiRs as biomarkers for ALS, which is a new area of research.
  2. Provides evidence: The study provides evidence that plasma isomiRs can be used to predict survival in ALS patients, which is a significant finding in the field of neurodegenerative diseases.

Comparison with the state of art:

The study's findings are comparable to existing biomarkers for ALS, such as neurofilament light chain (NfL) and miR-181. However, the study's focus on plasma isomiRs as biomarkers for ALS is a new area of research that contributes to our understanding of the potential utility of isomiRs in neurodegenerative diseases.

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